1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aaaaagtctgcactctggttcaacctttattctattgtaatatgttatctccaatttccaatcattgaccactgtctgattttatttgtaacctgtgcagTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGACCTAAACCATGTTGATGATGAGCCCTTTGAGTTGACCGAGGAAATTGA
species | Oryza sativa |
transcript | LOC_Os02g31290.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAAT TGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGEST: gi|29640690|gb|CB645699.1|CB645699
genomic: CGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAATgtgagtggtt ... acctgtgcagTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTG
EST: CGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAAT TGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGEST: gi|29622570|gb|CB627581.1|CB627581
genomic: CGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAATgtgagtggtt ... acctgtgcagTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTG
EST: CGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAAT TGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGEST: gi|29628253|gb|CB633264.1|CB633264
genomic: CGAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAATgtgagtggtt ... acctgtgcagTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTG
EST: GAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACGAGAAACC CCA-ATAAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTT
genomic: GAGAATGGGCTTTTCTCAAGCTCTGTATCAGATATTTTTGACAAGAAA-Tgtgagtggtt ... acctgtgcagTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTT
tatctccaatttccaatcattgaccactgtctgattttatttgtaacctgtgcagTGAGATTAACATCCAAGAATGGTCTTGTCGGTCAGTCAATTGAAAAGGTTGACCTAAACCATGTTGATGATGAGCCCTTTGAGTTGACCGAGGAAATTGA
ttgtaac putative branch site (score: 28)
tgattttatttgtaa TA-rich tract