Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagctatgcattgatactaccctgcggtaggtgctagcaattgattctattatttcctgcccatgtttgttcatatgcccttgcatttatcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT

Basic information

species Oryza sativa
transcript LOC_Os02g21660.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g21660.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G023748_T02 (Zea mays), 3'ss of exon 4
--tgagctatgcattgatactaccctgcggtaggtgctagcaattgattctattatttcctgcccatgtttgttcatatgcccttgcatttatcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT
      |||  || | |   |   | |    |  | | |           ||   |    |    || |    |||| |       | | | |  |||||||| |||||||| ||  ||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || |||||
ggaacactacacactcacg-tgtacaggtagacctacaactgcacatagataaggtgcattaaggatctgcactcatcttttgaatcgtgt-tttactgcagGAAAATTCCCTACCTTGGTGACACACCAGGAATCCCTTGAGTCCAAGGTTAATGAGACAAAGGCTACAGTTAAGTTCCAGCTGAAGAAGGTGCTTTGCAT

upper sequence: LOC_Os02g21660.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT1G08360.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------------------------------------------tgagctatgcattgatactaccctgcggtaggtgctagcaattgattctattatttcctgcccatgtttgt-tcatatgcccttgcatttatcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT
                                                                                   |   | |||  ||  |  |||  |||   |     || |   |||   |||  ||   ||   ||  ||   | | || || |||| ||||       |||| |||||||||||||| ||||  || ||||||||  | ||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||
gcaagttctggctacagctaatattccattgttcttctttacatccgttttgattttggataggttttagtagtctatttcttttgtcaatgtctttttgatacaatgcca-atcctttatcctgtgagattatgcttctttgatgattcttaagtaacattcctttgc-tttactttacacagGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTCAAAGGTGAATGAAACAAAGGCAACAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCAT

upper sequence: LOC_Os02g21660.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT5G22440.1 (Arabidopsis thaliana), 3'ss of exon 4
tgagctatgcattgatactaccctgcggtaggtgctagcaattgattctattatttcctgcccatgtttgttcatatgcccttg-catttatcgactg----cagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT
        ||||   |   ||| | |      |  | |||  || ||||  |||   ||    ||| |  | |||     |||| |  ||||  ||      |||| |||||||||||||| || |  || || || ||  | || ||||| || |||||||| ||||| |||||||| |||||||| ||||||||||| || ||
--------gcatgtctctaaccttac--ctaatctttgcatatg-ttcttgtatcctctctatatgatgctacattaaatcttgactcttatgaacaatgaacagGAAAATTCCCAACTCTTGTTAGCCACCAAGAGTCTTTGGAATCCAAAGTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAGAAGGTTCTATGTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86533791|gb|CI173997.1|CI173997
EST:     TCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|86509842|gb|CI152475.1|CI152475
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|58587586|gb|CF985894.1|CF985894
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|9886123|gb|AU063055.2|AU063055
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTG
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTG
EST: gi|88835009|gb|CI370312.1|CI370312
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33680146|gb|CF308385.1|CF308385
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88425319|gb|CI564836.1|CI564836
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCA
EST: gi|88838766|gb|CI376304.1|CI376304
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|25806934|gb|CA762895.1|CA762895
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88254853|gb|CI351481.1|CI351481
EST:     GGTCCTGGTCTTAACAAAGCA-                         GCAAATTCCCAACTCT-GTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: GGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|38482495|gb|CF966529.1|CF966529
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88262390|gb|CI366164.1|CI366164
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|218498145|gb|FG965353.1|FG965353
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88277369|gb|CI398171.1|CI398171
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACCAAGCAG                         GCAAATTCCCAACTCTGGTGACNCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|86893846|gb|CI314878.1|CI314878
EST:     TATCATCAAGCAGATTCCTCGACTTCTT-GTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCT-GTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33807700|gb|CF329742.1|CF329742
EST:     TTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|27554341|gb|CA998241.1|CA998241
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|11610305|gb|AU165981.1|AU165981
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTANCAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|89169053|gb|CI020593.1|CI020593
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33680145|gb|CF308384.1|CF308384
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33686983|gb|CF315222.1|CF315222
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|86509117|gb|CI151750.1|CI151750
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|15851161|gb|BI799437.1|BI799437
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|87012420|gb|CI280324.1|CI280324
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|218486730|gb|FG954848.1|FG954848
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCATGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|84117452|gb|CD151219.1|CD151219
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTC
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTC
EST: gi|88511613|gb|CI439119.1|CI439119
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|8527829|gb|AU092644.1|AU092644
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33679805|gb|CF308044.1|CF308044
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88977431|gb|CI025167.1|CI025167
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|58598949|gb|CK009477.1|CK009477
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88848729|gb|CI087251.1|CI087251
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88545478|gb|CI475041.1|CI475041
EST:     ACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: ACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88543238|gb|CI473228.1|CI473228
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33686984|gb|CF315223.1|CF315223
EST:     TAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88842852|gb|CI371752.1|CI371752
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|27334454|gb|CA882905.1|CA882905
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|58595647|gb|CK006175.1|CK006175
EST:     CATCAAGCAGATTCCTCCGACTTCTTGGGTCCTAGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: CATCAAGCAGATTCCTC-GACTTCTTGG-TCCT-GGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33681949|gb|CF310188.1|CF310188
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCACCTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|8527787|gb|AU092602.1|AU092602
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|218480694|gb|FG957034.1|FG957034
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|8527691|gb|AU092506.1|AU092506
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|27921137|gb|CB096945.1|CB096945
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|88523180|gb|CI450984.1|CI450984
EST:     TCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|2797298|gb|AA750592.1|AA750592
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|33681948|gb|CF310187.1|CF310187
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|8335305|gb|BE040289.1|BE040289
EST:     TATCATCAAGCAGATTCTTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
EST: gi|218478412|gb|FG955762.1|FG955762
EST:     TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAGGCAG                         GCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA
genomic: TATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 193

CTAGTTAAGAAGCTTGCAAAGAAATATCATGCTTTCCTTGCTTCTGAGGCTATCATCAAGCAGATTCCTCGACTTCTTGGTCCTGGTCTTAACAAAGCAGgcaagtggct ... tcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctattatttcctgcccatgtttgttcatatgcccttgcatttatcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT
     ttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagctatgcattgatactaccctgcggtaggtgctagcaattgattctattatttcctgcccatgtttgttcatatgcccttgcatttatcgactgcagGCAAATTCCCAACTCTGGTGACGCATCAGGAATCACTTGAGTCCAAGGTTAATGAGACTAAGGCTACAGTGAAATTCCAGCTGAAGAAGGTTCTCTGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - ctatgca
- - - - - - tgatact
- - - - - - - - - - -cctgcgg
- - - - - - - - - - - - - - - ggtgcta
- - - - - - - - - - - - - - - - - - -gcaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatt