1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgaaagatcctctgaaagacaattgaacattaagtttcaatgcaaatataagaatcaataacagggaagcatttcttaccatttttgtgcttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTGCCAACTATCCACCAAGGACAACTGCAGTTGTAAAATTTTCAGCCAACT
species | Oryza sativa |
transcript | LOC_Os02g15970.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|86852485|gb|CI320410.1|CI320410
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAACCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|86842367|gb|CI335266.1|CI335266
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|88971274|gb|CI387197.1|CI387197
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|86511453|gb|CI154086.1|CI154086
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|55413185|gb|CV725561.1|CV725561
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: CCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|86428139|gb|CI073236.1|CI073236
genomic: CCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTEST: gi|3760931|gb|C98185.1|C98185
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
EST: NCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTG GTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
genomic: TCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGgtaattacta ... cttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTT
aatataagaatcaataacagggaagcatttcttaccatttttgtgcttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTGCCAACTATCCACCAAGGACAACTGCAGTTGTAAAATTTTCAGCCAACT
ttcttac putative branch site (score: 3)
tttttgtgcttctt putative PPT
aatcaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaagatcctctgaaagacaattgaacattaagtttcaatgcaaatataagaatcaataacagggaagcatttcttaccatttttgtgcttcttacagGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTGCCAACTATCCACCAAGGACAACTGCAGTTGTAAAATTTTCAGCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - -aaagacaa
- - - - - - - - - - - -ttgaaca
- - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca