1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atattattgtacatatatttttttcacaaaggcattttgaaatatgtggatctatgcagaaactgcgttgctgcttgattagtttacttattccccacagGTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGACTGCAGAAGTGCTGGCAGGAAAAAGGGCAAAAGAGCGACTCTTTAACTT
species | Oryza sativa |
transcript | LOC_Os02g13990.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATAAATTGAAGCATTTGCGGTTGCTGGATTTCAAGAAAGTGAAACAACAG GTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGAEST: gi|116875219|gb|EC365727.1|EC365727
genomic: ATAAATTGAAGCATTTGCGGTTGCTGGATTTCAAGAAAGTGAAACAACAGgttagcaatg ... ttccccacagGTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGA
EST: ATAAATTGAAGCATTTGCGGTTGCTGGATTTCAAGGAAGTGAAACAACAG GTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGA
genomic: ATAAATTGAAGCATTTGCGGTTGCTGGATTTCAAGAAAGTGAAACAACAGgttagcaatg ... ttccccacagGTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGA
gtggatctatgcagaaactgcgttgctgcttgattagtttacttattccccacagGTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGACTGCAGAAGTGCTGGCAGGAAAAAGGGCAAAAGAGCGACTCTTTAACTT
gcttgat putative branch site (score: 10)
tttacttattcccc putative PPT
attagtttacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattattgtacatatatttttttcacaaaggcattttgaaatatgtggatctatgcagaaactgcgttgctgcttgattagtttacttattccccacagGTTGTTCATTCATTTCCTTTGGAATGACTGCCAAAATGATTTTGGAATGGACTGCAGAAGTGCTGGCAGGAAAAAGGGCAAAAGAGCGACTCTTTAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - cacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgct