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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcgacgacttgagagaggtcgatgtttacatgttaaaacttgaaggcgaaaacaagggttccaatctccccgtcgttttttgtagGTACAATTTTTGTGCTCCAGGCTTAGAGAAGACCAGGACGCAGTCAAGTCAAATGTACAAAATTAAGATTTTTAAAGATTTCGTCAGCAATGACATTTCC

Basic information

species Oryza sativa
transcript LOC_Os02g12480.9
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55430944|gb|CV728476.1|CV728476
EST:     GTCAGCTAATGAGACAATCCTCTGGCCATGTGCAAAGAGCTTGAGACAAG                         GTACAATTTTTGTGCTCCAGGCTTATAGAAGACCAGGACGCAATCAAGTCA
genomic: GTCAGCTAATGAGACAATCCTCTGGCCATGTGCAAAGAGCTTGAGACAAGgtgctcgacg ... ttttttgtagGTACAATTTTTGTGCTCCAGGCTTAGAGAAGACCAGGACGCAGTCAAGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaaaacttgaaggcgaaaacaagggttccaatctccccgtcgttttttgtagGTACAATTTTTGTGCTCCAGGCTTAGAGAAGACCAGGACGCAGTCAAGTCAAATGTACAAAATTAAGATTTTTAAAGATTTCGTCAGCAATGACATTTCC
                                  tctccccgtcgttttt  CT-rich tract
                                             ttttttgta  TA-rich tract