1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaaatattctcgcagttgcagttcagactccattgctctagtatagatgaatactccaaaagtaacttatgcttttatactcaaaccacataaatccagGGAGAAAAGGAAAACACAAAAGCCATTAGGCCAGAATTCTTCTGTCAAAAAGGATGATGAGTCAAATCCTGAATCACGAAAGGCTGGAGGCACTCCTGCC
species | Oryza sativa |
transcript | LOC_Os02g10690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
agatgaatactccaaaagtaacttatgcttttatactcaaaccacataaatccagGGAGAAAAGGAAAACACAAAAGCCATTAGGCCAGAATTCTTCTGTCAAAAAGGATGATGAGTCAAATCCTGAATCACGAAAGGCTGGAGGCACTCCTGCC
aagtaac putative branch site (score: 23)
ttttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaatattctcgcagttgcagttcagactccattgctctagtatagatgaatactccaaaagtaacttatgcttttatactcaaaccacataaatccagGGAGAAAAGGAAAACACAAAAGCCATTAGGCCAGAATTCTTCTGTCAAAAAGGATGATGAGTCAAATCCTGAATCACGAAAGGCTGGAGGCACTCCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - -gttgcag
- - - - - - - - - - - - - - ctccatt
- - - - - - - - - - - - - - - - - - - - - - - gatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccac