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...atgtattgtagatggatacatatgtgtagtatattacattttatttttgtcataatatccaattgatatgtcaataatgtcctctttctctgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATG
species | Oryza sativa |
transcript | LOC_Os02g10310.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAEST: gi|88324389|gb|CI566202.1|CI566202
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
EST: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTTCEST: gi|4969133|gb|AU066037.1|AU066037
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
EST: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAEST: gi|27548667|gb|CA766758.2|CA766758
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
EST: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA AGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
genomic: GGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAAgtacgcatcc ... tgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAA
tttgtcataatatccaattgatatgtcaataatgtcctctttctctgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATG
aattgat putative branch site (score: 4)
tgtcctctttctctgc putative PPT
aattgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtattgtagatggatacatatgtgtagtatattacattttatttttgtcataatatccaattgatatgtcaataatgtcctctttctctgccttttagAGGGCAAGGCCATCCAACAGGAGATTCTCGACCTTATTTTGGTCCTTCTAAGAAGCTTGATTTTGAACTTGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG