1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaatgtattttcttgaccatgccttgtgctgagacttgagacttgggttttgacataaacactaatctgcaatgtatgtttgcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA
species | Oryza sativa |
transcript | LOC_Os02g10310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|29636596|gb|CB641605.1|CB641605
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|29672586|gb|CB668861.1|CB668861
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|58597665|gb|CK008193.1|CK008193
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTEST: gi|29637361|gb|CB642370.1|CB642370
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGT
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|29672143|gb|CB668418.1|CB668418
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|29671042|gb|CB667317.1|CB667317
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|29636551|gb|CB641560.1|CB641560
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|29643533|gb|CB648540.1|CB648540
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|88324389|gb|CI566202.1|CI566202
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|4969133|gb|AU066037.1|AU066037
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCEST: gi|25798439|gb|CA754400.1|CA754400
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAGTCAG-TTATCATGGTCGTGCATCCTCTGTGATTGTATEST: gi|27548667|gb|CA766758.2|CA766758
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGT-AGGTTATCATGGTCGTGCATCCTCTGTGATTGTAT
EST: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG GTTTCAGCTTCCAATAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
tgagacttgggttttgacataaacactaatctgcaatgtatgtttgcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA
cactaat putative branch site (score: 65)
tttgcttc putative PPT
acataaa TA-rich tract