1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatttcagaggatagtaggaaccatggacagataaatatttcatctaattttgtctcagtaagctgcagtactaaaaatggatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACTGTTATCTCAGAAACAGGATTTATTCTGAAGGAAGATGAAGATAACCTGG
species | Oryza sativa |
transcript | LOC_Os02g10180.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACTEST: gi|29685029|gb|CB681304.1|CB681304
genomic: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
EST: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACTEST: gi|29663959|gb|CB660234.1|CB660234
genomic: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
EST: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
genomic: TGGATTACATCAACAAAATTGTGCTTGTTTTTTCTCCAGACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACT
atatttcatctaattttgtctcagtaagctgcagtactaaaaatggatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACTGTTATCTCAGAAACAGGATTTATTCTGAAGGAAGATGAAGATAACCTGG
tactaaa putative branch site (score: 1)
tttttc putative PPT
taaaaatggattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttcagaggatagtaggaaccatggacagataaatatttcatctaattttgtctcagtaagctgcagtactaaaaatggatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTAAAGACTACTCAACTGTTATCTCAGAAACAGGATTTATTCTGAAGGAAGATGAAGATAACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA