1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgatgatacctatcttttcactttgtaccatatgctgatttactgccttgttttatatttttaaggttcatactaatcaaaggtgattcttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATG
species | Oryza sativa |
transcript | LOC_Os02g08520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCATTGGTGCCAA GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATAEST: gi|88488981|gb|CI426252.1|CI426252
genomic: TGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
EST: TTTATATGTACCCTGGATTGCATTGGTGCCAA GGAACTANCGAAAGATTTTGTGGTTTCTGGCAGTGCTTCAGAATCACTATAEST: gi|86899863|gb|CI300033.1|CI300033
genomic: TTTATATGTACCATGGATTGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
EST: ATTTATATGTACCATGGATTGCATTGGTGCCAA GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATAEST: gi|5003116|gb|AU068225.1|AU068225
genomic: ATTTATATGTACCATGGATTGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
EST: AGATTATGATGACCCATTTATATGTACCATGGATTGCATTGNTGCNAA GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATAEST: gi|27921152|gb|CB096960.1|CB096960
genomic: AGATAATGATGAGCCATTTATATGTACCATGGATTGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
EST: GGAGATAATGATGAGCCATTTATATGTACCATGGATTGCATTGGTGCCAA GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATAEST: gi|88543734|gb|CI473768.1|CI473768
genomic: GGAGATAATGATGAGCCATTTATATGTACCATGGATTGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
EST: TTGCATTGGTGCCAA GGAACTANCGGAAGATTTTGTGGTTTCTGCCACTGCTTCAGAATCACTATAEST: gi|88509136|gb|CI436642.1|CI436642
genomic: TTGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
EST: GGAGATAATGATGAGCCATTTATATGTACCATGGATTGCATTGGTGCCAA GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
genomic: GGAGATAATGATGAGCCATTTATATGTACCATGGATTGCATTGGTGCCAAgtatgtatca ... ttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATA
gccttgttttatatttttaaggttcatactaatcaaaggtgattcttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATG
tactaat putative branch site (score: 16)
ttcttgt putative PPT
ttttatatttttaagg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatgatacctatcttttcactttgtaccatatgctgatttactgccttgttttatatttttaaggttcatactaatcaaaggtgattcttgtaagcagGGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATG
ttgatga
- - - - - - - - - - - - tgtacca
- - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa