1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttcatgattcctttgaaattatctattttgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAAGCTATTGAAGCAGTATGTAGTTGCTGATCCAGAGATCAAG
species | Oryza sativa |
transcript | LOC_Os02g05630.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|163926798|gb|EG715086.1|EG715086
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|5003494|gb|AU068643.1|AU068643
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|29662048|gb|CB658323.1|CB658323
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|29615476|gb|CB620488.1|CB620488
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: GGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|29666985|gb|CB663260.1|CB663260
genomic: GGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: TGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGATG GGACGTGGCGTGTTGGCGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|163920197|gb|EG714431.1|EG714431
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|29666852|gb|CB663127.1|CB663127
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|33675133|gb|CF303372.1|CF303372
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTEST: gi|33681625|gb|CF309864.1|CF309864
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTT
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|568785|gb|D39634.1|D39634
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
tgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAAGCTATTGAAGCAGTATGTAGTTGCTGATCCAGAGATCAAG
ttctaac putative branch site (score: 47)
ttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcatgattcctttgaaattatctattttgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAAGCTATTGAAGCAGTATGTAGTTGCTGATCCAGAGATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA