1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgttgcaccttcacttggttgatcatgattatttttctttttgtgatgtcatctcatgcatatttaaaaccttgatggtataactcatgcagCTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCGACTAGACCTCACCAGGCAACCGAGACAAACCAGGCTGCACAGCATTCGG
species | Oryza sativa |
transcript | LOC_Os02g03890.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGAACTATGCCTCCATT CTAAGAACCGCAAAAGCTCCEST: gi|58680181|gb|CK068868.1|CK068868
genomic: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATTgtatgttgca ... actcatgcagCTAAGAACCGCAAAAGCTCC
EST: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATT CTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCGEST: gi|163920587|gb|EG709594.1|EG709594
genomic: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATTgtatgttgca ... actcatgcagCTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCG
EST: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATT CTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCGEST: gi|66922134|gb|CX108982.1|CX108982
genomic: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATTgtatgttgca ... actcatgcagCTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCG
EST: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATT CTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCG
genomic: ATGTAGAGGAACCTGTTGGTGAACCAGTAAAGAAGACCTATGCCTCCATTgtatgttgca ... actcatgcagCTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCG
tttttgtgatgtcatctcatgcatatttaaaaccttgatggtataactcatgcagCTAAGAACCGCAAAAGCTCCACTGGTGTTCCCTGTAGCCCAGCCAGCCCCGACTAGACCTCACCAGGCAACCGAGACAAACCAGGCTGCACAGCATTCGG
gtataac putative branch site (score: 89)
atgcatatttaaaa TA-rich tract