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...ccataggatagttacatttataataggaattctaggattctttttgttccttatattttatttaaatattcttaatgtgatctatcaaaattattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTACTTGCAAAGGATCTGATTTTACAA
species | Oryza sativa |
transcript | LOC_Os02g03260.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|218494441|gb|FG968569.1|FG968569
genomic: GATGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: GAAACACTGATGCTGGTTTTGTGATGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|88336267|gb|CI648854.1|CI648854
genomic: GAAACACTGATGCTGGTTTTGTGATGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: TGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|88307301|gb|CI641939.1|CI641939
genomic: TGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: TGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|2312204|gb|C28359.1|C28359
genomic: TGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: AAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|88329810|gb|CI651478.1|CI651478
genomic: AAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: TGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|88571723|gb|CI663096.1|CI663096
genomic: TGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: GATGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|88326072|gb|CI651125.1|CI651125
genomic: GATGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: TGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTAEST: gi|29628818|gb|CB633829.1|CB633829
genomic: TGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
EST: GAAACACTGATGCTGGTTTTGTGATGGGCACTGGGAAGGCTCTTCTTAAG GTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
genomic: GAAACACTGATGCTGGTTTTGTGATGGGCACTGGGAAGGCTCTTCTTAAGgtatgtagaa ... ttattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTA
gttccttatattttatttaaatattcttaatgtgatctatcaaaattattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTACTTGCAAAGGATCTGATTTTACAA
tcttaat putative branch site (score: 28)
ttattttc putative PPT
ttatattttatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataggatagttacatttataataggaattctaggattctttttgttccttatattttatttaaatattcttaatgtgatctatcaaaattattttcagGTGCCTCCAACTATCAGGTTTGTATTAGATGGAGAAATGCCACCTTATTTACTTGCAAAGGATCTGATTTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG