Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttctaatattgtgctttcttgtcctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAG

Basic information

species Oryza sativa
transcript LOC_Os02g02960.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02960.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G060669_T04 (Zea mays), 3'ss of exon 4
gtaatttttctaat---attgtgctttcttgt-cctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAG
|||| |  | || |   | |   ||| || |  || ||||  ||||||   |  |     ||  |||||||  ||| |  ||         |  |   ||| |   |||| || ||   |         |  ||||  ||||||  |    |     | | |     |||| |||||  ||  |      || |||||||||||||||||||||||| ||||||| ||||| || || |||||||||||||| || || ||||| || ||| |||||||||| ||||||| | ||
gtaagtcctttattcagacttaacttgctcgggccactttaaggaaaaaagagat--gttta--tttatac--cttgaggaa---------agtagggtttcat--gtcttataatagca---------taccactgggtttgagcatgcatgtcaataacacatcaatcttatcagtgcatatgattgaatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G060669_T01 (Zea mays), 3'ss of exon 4
gtaatttttctaat---attgtgctttcttgt-cctctttggggaaaatgaaattttacctagttttatactacttaacaaactagaaatcaacaaaatttgactagtctgatgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAG----
|||| |  | || |   | |   ||| || |  || ||||  ||||||   |  |     ||  |||||||  ||| |  ||         |  |   ||| |   |||| || ||   |         |  ||||  ||||||  |    |     | | |     |||| |||||  ||  |      || |||||||||||||||||||||||| ||||||| ||||| || || |||||||||||||| || || ||||| || ||| |||||||||| ||||||| | ||    
gtaagtcctttattcagacttaacttgctcgggccactttaaggaaaaaagagat--gttta--tttatac--cttgaggaa---------agtagggtttcat--gtcttataatagca---------taccactgggtttgagcatgcatgtcaataacacatcaatcttatcagtgcatatgattgaatttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGGAAAAGGAACGCGAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGGTAA

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G064988_T05 (Zea mays), 3'ss of exon 3
--gtaatttttcta-atattgtgctttcttgt-cctctttggggaaaatgaaattttaccta-gttttatactacttaacaaactagaaatcaacaaaatttgactagtctga-tgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgttt-cagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAG----
   |    |||||| | | |   |||  |||| || |||   ||||||   |  | ||  ||    ||     || ||     |   | |  |||| |         || |||   ||    | || |   ||   || | | | | |||       |||       | |||| |||||     || || |||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || || ||||| || ||| |||||||||| ||||||| | ||    
gtatgtcctttctacagacttaacttgtttgtgccacttcaaggaaaaaatatgtctatttacaccttgaggaacgtagggtgccttataataacata--ccactgggtttgagcaatagctattgagtcctgagcctgcatgtcaataa----cacttt-------aaatcttatcag-----ttatgattattttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGAAAAAGGAATGCAAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAGGTAA

upper sequence: LOC_Os02g02960.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G064988_T03 (Zea mays), 3'ss of exon 3
--gtaatttttcta-atattgtgctttcttgt-cctctttggggaaaatgaaattttaccta-gttttatactacttaacaaactagaaatcaacaaaatttgactagtctga-tgatgataagtggggtttggcactacgtttgactaaatgttgtttttagatggagatctgatcagcacagttttggttatgttt-cagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAG
   |    |||||| | | |   |||  |||| || |||   ||||||   |  | ||  ||    ||     || ||     |   | |  |||| |         || |||   ||    | || |   ||   || | | | | |||       |||       | |||| |||||     || || |||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || || ||||| || ||| |||||||||| ||||||| | ||
gtatgtcctttctacagacttaacttgtttgtgccacttcaaggaaaaaatatgtctatttacaccttgaggaacgtagggtgccttataataacata--ccactgggtttgagcaatagctattgagtcctgagcctgcatgtcaataa----cacttt-------aaatcttatcag-----ttatgattattttttcagGTGAAAGAGGTTGCTCTTCCAGCAAGAAAAAGGAATGCAAGGCTTTCTTTTGCATTTGTATACCCAGACAAGAATGGTCGTTTTGTTGTCAGACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10930921|gb|AU161195.1|AU161195
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|38469768|gb|CF953899.1|CF953899
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58587706|gb|CF986014.1|CF986014
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58603994|gb|CK014522.1|CK014522
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|11565040|gb|AU165676.1|AU165676
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|29659833|gb|CB656108.1|CB656108
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88760807|gb|CI770363.1|CI770363
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33660656|gb|CF291623.1|CF291623
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|5667413|gb|AU077655.1|AU077655
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCCCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCCAAGAAANAGAAATGCAAGGCTTTCTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAG-CAAGAAAAAGAAATGCAAGGCTTTCTTT
EST: gi|88399521|gb|CI606142.1|CI606142
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58664968|gb|CK053654.1|CK053654
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88329643|gb|CI650106.1|CI650106
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33659745|gb|CF282358.1|CF282358
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88725672|gb|CI748931.1|CI748931
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAAT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAAT
EST: gi|86841950|gb|CI338359.1|CI338359
EST:     GGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|23514260|gb|BU673547.1|BU673547
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|11610498|gb|AU166174.1|AU166174
EST:     ACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: ACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88694523|gb|CI738561.1|CI738561
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|58590816|gb|CF989124.1|CF989124
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTGGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|11610501|gb|AU166177.1|AU166177
EST:     GAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88266376|gb|CI377278.1|CI377278
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33659744|gb|CF282357.1|CF282357
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|27576068|gb|CA998762.1|CA998762
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88352110|gb|CI613761.1|CI613761
EST:     TGCAGATATAAACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGAAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88960218|gb|CI382096.1|CI382096
EST:     GATGCCACACTCCGAGAGCTCACTTATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33660655|gb|CF291622.1|CF291622
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33657429|gb|CF280043.1|CF280043
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33806035|gb|CF328897.1|CF328897
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|33658759|gb|CF281372.1|CF281372
EST:     GCAGATATACACCGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GCAGATATACAC-GTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|88348144|gb|CI637605.1|CI637605
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|38468952|gb|CF953083.1|CF953083
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTC
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTC
EST: gi|33657430|gb|CF280044.1|CF280044
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGC
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGC
EST: gi|33653966|gb|CF276580.1|CF276580
EST:     GCAGATATACACGNTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: GCAGATATACACG-TGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|55438399|gb|CV732495.1|CV732495
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|5667412|gb|AU077654.1|AU077654
EST:     TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT
EST: gi|8857631|gb|AU094949.1|AU094949
EST:     TGCAGATATACACGTGGANGGATGCCACACTCCGAGAGCTCACTGATCTT                         GTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATNCAAGGCTTTCTTTT
genomic: TGCAGATATACACGTGGAAGGATGCCACACTCCGAGAGCTCACTGATCTTgtaatttttc ... tatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaatgttgtttttagatggagatctgatcagcacagttttggttatgtttcagGTGAAAGAGGTTGCTCTTGCAGCAAGAAAAAGAAATGCAAGGCTTTCTTTTGCTTTCGTGTACCCTGATAAGCATGGTCGTTTCGTTGTCAAAGAG
                       atctgat  putative branch site (score: 4)
       ttgttttta  TA-rich tract