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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagattcatcactgaacccagtagctgaatctgaatctgaatctgaatctgaatatgaatctctgtcactgatgaggtgtgttgcttggatgcgtggcagGAGGAGGAGGAGGCTGATGGCGGCGGTGGCGCCAAGACGCGGCTGCTGGTCCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGTCGAGATAT

Basic information

species Oryza sativa
transcript LOC_Os02g02820.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02820.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G139372_T05 (Zea mays), 3'ss of exon 4
------------------------gtaagcaagattcatcactgaacccagtagctgaatctgaatctgaatctgaatctgaatatgaatctctgtcactgatgaggtgtgttgcttggatgcgtggcagGA---GGAGGAGGAGGCTGATGGCGGCGGTGGCGCCAAGACGCGGCTGCTGGTCCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGTCGAGATAT
                         |  ||     |||||    | | |  |  ||   || || ||     |     || |  ||  ||| |     |   |  | |      |||| || | || ||||    || | ||||| | |    | |||| ||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| 
gtaagcagagcacatcgatcgatcatcggctcttgtcatcttcaacctccctccctccgtccga-tccagtccactgcctaagaatccatc-caactgcatgtctgatcatcgtcttgtatccatgacagGGCATGGTGCAGGAGCCCGGGTCCAGCGGCGGCCCGAGGACGCGGCTGCTGGTGCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGGCGAGATAC

upper sequence: LOC_Os02g02820.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G139372_T04 (Zea mays), 3'ss of exon 3
----------------------------gtaagcaagattcatcactgaacccagtagctgaatctgaatctgaatctgaatctgaatatgaatctctgtcactgatgaggtgtgttgcttggatgcgtggcagGA---GGAGGAGGAGGCTGATGGCGGCGGTGGCGCCAAGACGCGGCTGCTGGTCCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGTCGAGATAT
                             |  ||     |||||    | | |  |  ||   || || ||     |     || |  ||  ||| |     |   |  | |      |||| || | || ||||    || | ||||| | |    | |||| ||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| 
gtacgtaagcagagcacatcgatcgatcatcggctcttgtcatcttcaacctccctccctccgtccga-tccagtccactgcctaagaatccatc-caactgcatgtctgatcatcgtcttgtatccatgacagGGCATGGTGCAGGAGCCCGGGTCCAGCGGCGGCCCGAGGACGCGGCTGCTGGTGCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGGCGAGATAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctgaatatgaatctctgtcactgatgaggtgtgttgcttggatgcgtggcagGAGGAGGAGGAGGCTGATGGCGGCGGTGGCGCCAAGACGCGGCTGCTGGTCCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGTCGAGATAT
                     cactgat  putative branch site (score: 3)
      aatatgaat  TA-rich tract