1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtttaccatttactgaagagcaatcaggacatacattgtttcttttcaaaaccgggctgtttaaacgtttacagcatgtacctctgatttcccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGG
species | Oryza sativa |
transcript | LOC_Os02g02690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCGGATTATCTCTACCAGGTGCAGCAAGAGCAGCCAGCCATGACCGTG GACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAEST: gi|396941424|gb|HO188633.1|HO188633
genomic: CATCGGATTATCTCTACCAGGTGCAGCAAGAGCAGCCAGCCATGACCGTGgtatgtataa ... cccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTA
EST: AGCAAGAGCAGCCAGCCATGACCGTG GACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAEST: gi|58678980|gb|CK067667.1|CK067667
genomic: AGCAAGAGCAGCCAGCCATGACCGTGgtatgtataa ... cccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTA
EST: CATCGGATTATCTCTACCAGGTGCAGCAAGAGCAGCCAGCCATGACCGTG GACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGGCCCGCEST: gi|86502560|gb|CI145193.1|CI145193
genomic: CATCGGATTATCTCTACCAGGTGCAGCAAGAGCAGCCAGCCATGACCGTGgtatgtataa ... cccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGG-CCCGC
EST: CATCGGATTATCTCTACCAGGTGCAGCAAGAGCAGCCAGCCATGACCGTG GACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTA
genomic: CATCGGATTATCTCTACCAGGTGCAGCAAGAGCAGCCAGCCATGACCGTGgtatgtataa ... cccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTA
tcaaaaccgggctgtttaaacgtttacagcatgtacctctgatttcccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGG
ctctgat putative branch site (score: 11)
tttcccgtt CT-rich tract
tgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaccatttactgaagagcaatcaggacatacattgtttcttttcaaaaccgggctgtttaaacgtttacagcatgtacctctgatttcccgttgcagGACATGGTTGACTATCAACGAACTCTGGCAAGAGAGATTGAGGCCCGCTTAGAAGCCAAGTGTGATGCTTTAGCTGATCTGTTTGCAATGGATGAAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -ttactga
- - - - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatt