1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtccaaactctccttggaagagctttttcattcatgtaactacttaatactgtatctgtgcaattaagattgttcatgtgcttattttttttctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGATAATGCCATCGTTTGGTGTGCTCCATTTTTCCACT
species | Oryza sativa |
transcript | LOC_Os02g02530.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCCGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGAEST: gi|58590779|gb|CF989087.1|CF989087
genomic: TTGCCGCTCTCTGgtaagtccaa ... tctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGA
EST: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGAEST: gi|701074|gb|D47365.1|D47365
genomic: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTGgtaagtccaa ... tctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGA
EST: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTG TGCA-CATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGAEST: gi|701106|gb|D47397.1|D47397
genomic: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTGgtaagtccaa ... tctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGA
EST: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGGAATTEST: gi|701499|gb|D47790.1|D47790
genomic: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTGgtaagtccaa ... tctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGG-AATG
EST: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTG TGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATAA
genomic: AATGCTGTTCTCACTGCCTACTTTTTCATCCTTGGCATTGCCGCTCTCTGgtaagtccaa ... tctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGA
atactgtatctgtgcaattaagattgttcatgtgcttattttttttctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGATAATGCCATCGTTTGGTGTGCTCCATTTTTCCACT
ttctgat putative branch site (score: 26)
tgcttattttttttct CT-rich tract
ttattttttttctgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccaaactctccttggaagagctttttcattcatgtaactacttaatactgtatctgtgcaattaagattgttcatgtgcttattttttttctgatgcagTGCAACATTGCTGCCTTCCATAAAACGATTCCTTCCAAAAGAATGGAATGATAATGCCATCGTTTGGTGTGCTCCATTTTTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA