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gttcttcactaaactctatttctcttgttgcaaaaaaaaaggattgtctttgtatgtttttgctaaattgtcccattgatcggtgagtcactctattgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCAAAAATCGAAGCTGAAATGAGAAAAATTGAG
species | Oryza sativa |
transcript | LOC_Os02g02500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAG ATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCEST: gi|87013403|gb|CI265501.1|CI265501
genomic: GTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAGgttcttcact ... tgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGC
EST: ATTCGTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAG ATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCEST: gi|88834367|gb|CI077650.1|CI077650
genomic: ATTCGTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAGgttcttcact ... tgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGC
EST: CAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAG ATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCEST: gi|89186959|gb|CI053362.1|CI053362
genomic: CAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAGgttcttcact ... tgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGC
EST: ATTCGTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAG ATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCEST: gi|86888661|gb|CI305729.1|CI305729
genomic: ATTCGTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAGgttcttcact ... tgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGC
EST: ATTCGTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAG ATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGC
genomic: ATTCGTGCAGCAGCGTGGGAGGAGGCAGAGAAGGCTAAATATTTAGCAAGgttcttcact ... tgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGC
gtatgtttttgctaaattgtcccattgatcggtgagtcactctattgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCAAAAATCGAAGCTGAAATGAGAAAAATTGAG
ctctatt CT-rich tract
taaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttcactaaactctatttctcttgttgcaaaaaaaaaggattgtctttgtatgtttttgctaaattgtcccattgatcggtgagtcactctattgcattccagATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCAAAAATCGAAGCTGAAATGAGAAAAATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA