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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacaattcagatacataaattatattgtggactgagtgttcagatgaactctgtgcttactgaatgtctgaatgtttatgtgcatatgctgtccagGAATTTCTCAGGAAGGAAAGAAGCACGTCTCTAACAAAACAGTGATAGTTACACTGCTAGTATGTGTGATCCTCACCACTATTGCATTCCTTGGCACCAC

Basic information

species Oryza sativa
transcript LOC_Os02g02040.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117230883|gb|CT842191.1|CT842191
EST:     CACTGCAGTACATGATAGGGGCTGCTTCACTTCCTGTAACTGCACATCCG                         GAATTTCTCAGGAAGGAAAGAAGCACGTCTCTAACAAAACAGTGATAGTTA
genomic: CACTGCAGTACATGATAGGGGCTGCTTCACTTCCTGTAACTGCACATCCGgtattacaat ... tgctgtccagGAATTTCTCAGGAAGGAAAGAAGCACGTCTCTAACAAAACAGTGATAGTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgaactctgtgcttactgaatgtctgaatgtttatgtgcatatgctgtccagGAATTTCTCAGGAAGGAAAGAAGCACGTCTCTAACAAAACAGTGATAGTTACACTGCTAGTATGTGTGATCCTCACCACTATTGCATTCCTTGGCACCAC
            tgcttac  putative branch site (score: 2)
                             aatgtttat  TA-rich tract