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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcagttggtaccttactagctaggactattattattatagtaggagtaattatttgttcaatttcgcaattgcaccacaaaattactcatgtaaacatttccttttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG

Basic information

species Oryza sativa
transcript LOC_Os02g01150.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38477990|gb|CF962123.1|CF962123
EST:     TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG                         ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
genomic: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: gi|58693460|gb|CK082147.1|CK082147
EST:     TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG                         ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
genomic: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: gi|10794734|gb|AU108700.1|AU108700
EST:     TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG                         ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
genomic: TGGGAGTCATCGGAGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: gi|11442863|gb|BF430762.1|BF430762
EST:     GGGAGTCATCGGAGCTGGTCGACATCGGCTCAGCTTACGCAAGAATGATG                         ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
genomic: GGGAGTCATCGGAGCTGGTCGA-ATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
EST: gi|38481826|gb|CF965897.1|CF965897
EST:     AGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATG                         ATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG
genomic: AGCTGGTCGAATCGGCTCAGCTTACGCAAGAATGATGgttagttcag ... tttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttcgcaattgcaccacaaaattactcatgtaaacatttccttttaccacagATCGAGGGCTTCAAGATGAACTTGATCTACTACGACCTGTATCAGTCCACGCGCCTTGAGAAATTCGTCACAG
                                     catttccttttacc  CT-rich tract
                  acaaaatta  TA-rich tract