Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatcactaaaccagttattggacataatgtttatgttttttttgaaatcaacgataaatgacaatttcttatctatgggaccatctacttcttatgtagGATGAACATACCTGCAAATACTTTCCAGCCTCGAGCACGTCCCCTTTTTCAGTATAGGCACTACAG

Basic information

species Oryza sativa
transcript LOC_Os01g74310.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74310.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G459642_T01 (Zea mays), 3'ss of exon 4
tcatcactaaaccagt-tattggacataatgtttatgttttttttgaaatcaacgataaatgacaatttcttatctatgggaccatcta---cttcttatgtagGATGAACATACCTGCAAATACTTTCCAGCCTCGAGCACGTCCCCTTTTTCAGTATAGGCACTACAG
  |  |   | | ||  ||       | |     ||  ||| ||| ||||   | || | | | |    ||||| | ||| |   ||||    |  || | |||||||||||||||   ||| || ||||||||||||||||| || ||||||||||| ||  |||||||
--agtaggtatctagcataaactttgttacacgcataatttgttt-aaattgccaatgattcaaataaacttattt-tggaatggtctaaccttctttttttagGATGAACATACCAATAAACACATTCCAGCCTCGAGCACGGCCTCTTTTTCAGTACAGATACTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcaacgataaatgacaatttcttatctatgggaccatctacttcttatgtagGATGAACATACCTGCAAATACTTTCCAGCCTCGAGCACGTCCCCTTTTTCAGTATAGGCACTACAG
                                       tctacttctt  CT-rich tract
         ataaatgacaattt  TA-rich tract