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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttttgttggcactaagttgagtgaagttaaaattttgagagtagtgcttccgtgaatgattttgtaatgttgtttcagAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCA

Basic information

species Oryza sativa
transcript LOC_Os01g73840.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163929104|gb|EG713025.1|EG713025
EST:     GTTGGTGCAACTCTCTTACTTCCGTCACCCTATCTCCAGATGGTTTTGAG                         AGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGG
genomic: GTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGgtctgttttg ... gttgtttcagAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGG
EST: gi|58663455|gb|CK052141.1|CK052141
EST:     GTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAG                         AGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGG
genomic: GTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGgtctgttttg ... gttgtttcagAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttaaaattttgagagtagtgcttccgtgaatgattttgtaatgttgtttcagAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCA
                                              ttgtttc  CT-rich tract
                               aatgattttgtaat  TA-rich tract