1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cataactatgcattaactaaagaatccctactggattgtgtttatatgttatcctaacggatgctctgtactgacttcagaatactattattcgtaccagCGGAAGCTACCAATTTTCTTGTGGACAACAGTATAGGTGAACAATTGATTCTCCGTGAATTGATGCTGTCTTTTTTAAATTACCTCAAATCCCAGCAAAC
species | Oryza sativa |
transcript | LOC_Os01g73234.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
atgttatcctaacggatgctctgtactgacttcagaatactattattcgtaccagCGGAAGCTACCAATTTTCTTGTGGACAACAGTATAGGTGAACAATTGATTCTCCGTGAATTGATGCTGTCTTTTTTAAATTACCTCAAATCCCAGCAAAC
tactgac putative branch site (score: 8)
agaatactattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataactatgcattaactaaagaatccctactggattgtgtttatatgttatcctaacggatgctctgtactgacttcagaatactattattcgtaccagCGGAAGCTACCAATTTTCTTGTGGACAACAGTATAGGTGAACAATTGATTCTCCGTGAATTGATGCTGTCTTTTTTAAATTACCTCAAATCCCAGCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -ctatgca
- - - - - - - aactaaa
- - - - - - - - - - - - - cctactg
- - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtactg