1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctacttcattacatgccaatatgttaggatcccatacttggatacataatttccatttcttaaattgcttgcacaacgattacatttgttggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAGCTTTTGTAATCTCTTGTGAACAAGACTACAAAATATGCGTGCCATTCA
species | Oryza sativa |
transcript | LOC_Os01g71256.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACCTAGCAAGGAGCTTTTGAAAAGTTTAGTAGTGACTGCTCATGGCAAG GTGTTGGAGAGAAACCCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAEST: gi|88284730|gb|CI406176.1|CI406176
genomic: AACCTAGCAAGGAGCTTTTGAAAAGTTTAGTAGTGACTGCTCATGGCAAGgtatacgctt ... ggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGA
EST: TGCTCATGGCAAG GTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAEST: gi|88831405|gb|CI083799.1|CI083799
genomic: TGCTCATGGCAAGgtatacgctt ... ggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGA
EST: AACCTAGCAAGGAGCTTTTGAAAAGTTTAGTAGTGACTGCTCATGGCAAG GTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAEST: gi|88503548|gb|CI431054.1|CI431054
genomic: AACCTAGCAAGGAGCTTTTGAAAAGTTTAGTAGTGACTGCTCATGGCAAGgtatacgctt ... ggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGA
EST: TTTAGTAGTGACTGCTCATGGCAAG GTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAEST: gi|88217255|gb|CI217104.1|CI217104
genomic: TTTAGTAGTGACTGCTCATGGCAAGgtatacgctt ... ggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGA
EST: GCTCATGGCAAG GTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGA
genomic: GCTCATGGCAAGgtatacgctt ... ggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGA
ataatttccatttcttaaattgcttgcacaacgattacatttgttggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAGCTTTTGTAATCTCTTGTGAACAAGACTACAAAATATGCGTGCCATTCA
atttcttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacttcattacatgccaatatgttaggatcccatacttggatacataatttccatttcttaaattgcttgcacaacgattacatttgttggtttgccagGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGTTTAATGGGAGCTTTTGTAATCTCTTGTGAACAAGACTACAAAATATGCGTGCCATTCA
- - - - -tacatgc
- - - - - - - - - - - - - - - cccatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatttg