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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttatatagcacttaattggtatagtttaactctgattaatgatctaagtatactgctagctagaattaagctttcgtttatgtttatgatctcaagGCAACACTCAGCTGCACATAGAACTCGAAGAGCTGGTTGCAAGATTCGTCAGGAAGCCTTCGGCTATTCTGCTTGCCATGGGTTATGCCACCAACTCTGC

Basic information

species Oryza sativa
transcript LOC_Os01g70360.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678345|gb|CF306584.1|CF306584
EST:     GTCTCTGAAGAAATACTCTGCTAGTACCTGCAGTTCCCGAGTCGATGGAG                         GCAACACTCAGCTGCACATAGAACTCGAAGAGCTGGTTGCAAGATTCGTCA
genomic: GTCTCTGAAGAAATACTCTGCTAGTACCTGCAGTTCCCGAGTCGATGGAGgtacatttat ... tgatctcaagGCAACACTCAGCTGCACATAGAACTCGAAGAGCTGGTTGCAAGATTCGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaagtatactgctagctagaattaagctttcgtttatgtttatgatctcaagGCAACACTCAGCTGCACATAGAACTCGAAGAGCTGGTTGCAAGATTCGTCAGGAAGCCTTCGGCTATTCTGCTTGCCATGGGTTATGCCACCAACTCTGC
                                   tttatgtttatgat  TA-rich tract