1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagtctggatgtcaagtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtttggaccattgccttttattgtagcttacccatgtcctcttgcatattggcagACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACATCCTGAGAGACTCCATTGAACAATTCAAAACATCAGAATTACTCAGAGG
species | Oryza sativa |
transcript | LOC_Os01g70060.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGCTTTGTTGACAATCTCAGCAACGAATATGAGAACAACTCTATTTTAG ACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACAEST: gi|29638160|gb|CB643169.1|CB643169
genomic: TAGCTTTGTTGACAATCTCAGCAACGAATATGAGAACAACTCTATTTTAGgtgaggatat ... atattggcagACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACA
EST: TAGCTTTGTTGACAATCTCAGCAACGAATATGAGAACAACTCTATTTTAG ACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACAEST: gi|58665494|gb|CK054180.1|CK054180
genomic: TAGCTTTGTTGACAATCTCAGCAACGAATATGAGAACAACTCTATTTTAGgtgaggatat ... atattggcagACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACA
EST: TAGCTTTGTTGACAATCTCAGCAATGAATATGAGAACAACTCTATTTTAG ACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACG
genomic: TAGCTTTGTTGACAATCTCAGCAACGAATATGAGAACAACTCTATTTTAGgtgaggatat ... atattggcagACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACA
gtttggaccattgccttttattgtagcttacccatgtcctcttgcatattggcagACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACATCCTGAGAGACTCCATTGAACAATTCAAAACATCAGAATTACTCAGAGG
agcttac putative branch site (score: 19)
ttttattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtctggatgtcaagtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtttggaccattgccttttattgtagcttacccatgtcctcttgcatattggcagACTGTAGTAATGGATCTGGCTTTGTGGAGGAGCTGCAAGAACAACATAACATCCTGAGAGACTCCATTGAACAATTCAAAACATCAGAATTACTCAGAGG
- - ctggatg
- - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtcc