Sequence
atgc intronic sequence ATGC exonic sequencegtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctgtttgcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
Basic information
| species | Oryza sativa |
| transcript | LOC_Os01g68860.1 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g68860.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G107491_T01 (Zea mays), 3'ss of exon 4
gtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctg-tttgcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
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gtttgttttttcttgcca------gttacatgtcct-cttctacata----tgtctgtttgttttgctgaaaaggagtctactttacttttgtagAATGAAAAGGAGTGTGCGTATTATTTAAAAACAGGACAATGTAAATATGCAAATACTTGTAAATTCCACCACCCAGAACTTTTCAATGTGGTGCCTTCGT
upper sequence: LOC_Os01g68860.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G087032_T01 (Zea mays), 3'ss of exon 4
gtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctg-tttgcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
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gtttgtcttccgttgc----------catttatatctcctcttc-tacatatgtctgtttgttttgctgaaaagaagtccactttgcttctgtagAATGAAAAGGAGTGTGCATATTATTTAAAAACAGGACACTGTAAATATGCAAATACTTGTAAATTCCACCATCCGGAACTTTTCAATGTGGTGCCTTCGT
upper sequence: LOC_Os01g68860.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA09G38650.2 (Glycine max), 3'ss of exon 4
gtttgtagtttattgctgcagcacatcatctgcccttcctttttatagtttcttctctt--tgatgtactgaagtgaagt---ctgtttgcttctg---tagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
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--agataatttttctatttaatatctgacacctgattgttttgtttgattgctgatattaataatctaattcaatatttttttctgtttctttttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCA
upper sequence: LOC_Os01g68860.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 4
---gtttgtagtt--tattgctgcagcacatcatctgcccttcctttttatagtttcttctctttgatgtactgaagtgaagtctgtttgcttc--tgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
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tgcacctgacattgccaaagctcctgcattttag-tgtttgtgcttctttggtgggatgaaattttatatcctgattttccctgttctttctttcgtgtagGATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGAAGTACATGTAAATTTCACCATCCTCAACCATCTAGTATGATGGTTTCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218503721|gb|FG969763.1|FG969763EST: CAGCTAAACACATTAGGATATCCACTCCGACCG AGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGG
genomic: CAGCTAAACACATTAGGATATCCACTCCGACCGgtttgtagtt ... gcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttatagtttcttctctttgatgtactgaagtgaagtctgtttgcttctgtagAGTGAAAAGGAGTGTGCATATTACTTAAAAACAGGACAGTGTAAATATGGGAATACATGTAAATTTCACCATCCAGAACTTTTCAATGCTATGGCTTCTT
ctttgat putative branch site (score: 5)
tttgcttct putative PPT
atagttt TA-rich tract
