1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttattccttttccctggaatactgaacttctccatatttatccatagtccatactgaggtagcttgaatgaccaaggatgttatcaaaaataggaaatggactgtgcagttcatatcaatggccttcgcatatccaacaacctacattgttgtttttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGAT
species | Oryza sativa |
transcript | LOC_Os01g68710.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|86829393|gb|CI285036.1|CI285036
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|51946051|gb|CV152392.1|CV152392
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55440369|gb|CV733494.1|CV733494
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88723491|gb|CI747001.1|CI747001
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55436956|gb|CV731667.1|CV731667
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTAAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55409944|gb|CV722320.1|CV722320
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88723609|gb|CI747119.1|CI747119
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88722134|gb|CI745461.1|CI745461
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAEST: gi|33659572|gb|CF282185.1|CF282185
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55438455|gb|CV732524.1|CV732524
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88344739|gb|CI624390.1|CI624390
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGGCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88723542|gb|CI747052.1|CI747052
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|86829242|gb|CI284927.1|CI284927
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|11171677|gb|AU163906.1|AU163906
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55436954|gb|CV731666.1|CV731666
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTAAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55433322|gb|CV729734.1|CV729734
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88726773|gb|CI750428.1|CI750428
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55413431|gb|CV725807.1|CV725807
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|2442348|gb|C74119.1|C74119
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGN-AAGTGATAAAAG GTTGGGACCAAGGGT-ACTAGGTATGTGTGTCGGTGAAAEST: gi|55414253|gb|CV726629.1|CV726629
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55412950|gb|CV725326.1|CV725326
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGAAAGCTAAEST: gi|88827090|gb|CI777655.1|CI777655
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|2442460|gb|C74231.1|C74231
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGGACCAAGGGTTACTANGTATGTGTGTCGGTGAAAAGAGGAAGCTAEST: gi|55441436|gb|CV734038.1|CV734038
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGG-ACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|33685240|gb|CF313479.1|CF313479
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|55413109|gb|CV725485.1|CV725485
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88242499|gb|CI242348.1|CI242348
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|88276548|gb|CI397350.1|CI397350
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTT-GAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAEST: gi|163928575|gb|EG711160.1|EG711160
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
EST: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG GTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAGgttattcctt ... ttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAA
tcatatcaatggccttcgcatatccaacaacctacattgttgtttttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGAT
tttttatct CT-rich tract
ttgtttttatctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattccttttccctggaatactgaacttctccatatttatccatagtccatactgaggtagcttgaatgaccaaggatgttatcaaaaataggaaatggactgtgcagttcatatcaatggccttcgcatatccaacaacctacattgttgtttttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA