1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttctagtacgcgcaccctatgtttgtatttttcaccagcttgcatcattctgatgttactactaatttatatcagctttgacatatatctttcgtgcagTATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTGACATGCATTTTTTCTGTGGAGACTCATCTTTTGCAAAGTCCAATCAG
species | Oryza sativa |
transcript | LOC_Os01g68010.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCACCCATTGAGCCTTGGGAAGACAACTGCATGGAATCAGTTCTTTGAG TATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTEST: gi|38565749|gb|CK085202.1|CK085202
genomic: AGCACCCATTGAGCCTTGGGAAGACAACTGCATGGAATCAGTTCTTTGAGgtgcccactg ... tttcgtgcagTATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCT
EST: AGCACCCATTGAGCCTTGGGAAGACAACTGCATGGAATCAGTTCTTTGAG TATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTEST: gi|58652950|gb|CK041630.1|CK041630
genomic: AGCACCCATTGAGCCTTGGGAAGACAACTGCATGGAATCAGTTCTTTGAGgtgcccactg ... tttcgtgcagTATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCT
EST: AGCACCCATTGAGCCTTGGGAAGACAACTGCATGGAATCAGTTCTTTGAG TATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCT
genomic: AGCACCCATTGAGCCTTGGGAAGACAACTGCATGGAATCAGTTCTTTGAGgtgcccactg ... tttcgtgcagTATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCT
tcattctgatgttactactaatttatatcagctttgacatatatctttcgtgcagTATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTGACATGCATTTTTTCTGTGGAGACTCATCTTTTGCAAAGTCCAATCAG
tatctttc CT-rich tract
ttactactaatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctagtacgcgcaccctatgtttgtatttttcaccagcttgcatcattctgatgttactactaatttatatcagctttgacatatatctttcgtgcagTATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTGACATGCATTTTTTCTGTGGAGACTCATCTTTTGCAAAGTCCAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG