1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaatgaatcttcactttgaaaaattgaagttatttattttctgcataaagctcaattggctgcagaaatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAGAAGTTCGAAGGCCTGATTTGCTCTCATCAGTGAGGATACACCATGCTC
species | Oryza sativa |
transcript | LOC_Os01g67920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAG GCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAEST: gi|58688532|gb|CK077219.1|CK077219
genomic: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAGgtgaatgaat ... aatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAA
EST: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAG GCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAEST: gi|58664547|gb|CK053233.1|CK053233
genomic: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAGgtgaatgaat ... aatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAA
EST: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAG GCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAEST: gi|58664496|gb|CK053182.1|CK053182
genomic: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAGgtgaatgaat ... aatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAA
EST: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAG GCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAEST: gi|58688799|gb|CK077486.1|CK077486
genomic: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAGgtgaatgaat ... aatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAA
EST: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAG GCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAA
genomic: CACATTTTATGTTGGGTTTGATGTACCAAAGGCTTGGTCAGCCACAGAAGgtgaatgaat ... aatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAA
aattgaagttatttattttctgcataaagctcaattggctgcagaaatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAGAAGTTCGAAGGCCTGATTTGCTCTCATCAGTGAGGATACACCATGCTC
tcttcc CT-rich tract
aagttatttattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgaatcttcactttgaaaaattgaagttatttattttctgcataaagctcaattggctgcagaaatcttccagGCAATAGCGGCATATGAGAAGTCATCTGAGATATTGTTACAAGATGAAGAAGAAGTTCGAAGGCCTGATTTGCTCTCATCAGTGAGGATACACCATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT