1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttcaaactcttgtttgagcctagtcaggcatcttcccatttgtgtttattccatttcatcagattccgaccctaacaattcacatcatgggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTCCGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCGAC
species | Oryza sativa |
transcript | LOC_Os01g67850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33693004|gb|CF321243.1|CF321243
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTEST: gi|33685056|gb|CF313295.1|CF313295
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|3766680|gb|AU030790.1|AU030790
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTNTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33693005|gb|CF321244.1|CF321244
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|88985618|gb|CI016327.1|CI016327
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: TGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33693590|gb|CF321829.1|CF321829
genomic: TGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|88956854|gb|CI009076.1|CI009076
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|9884501|gb|BE607334.1|BE607334
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|86834866|gb|CI345950.1|CI345950
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: CTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|88983314|gb|CI028551.1|CI028551
genomic: CTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|86415656|gb|CI029667.1|CI029667
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33688530|gb|CF316769.1|CF316769
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|88543210|gb|CI473200.1|CI473200
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33691280|gb|CF319519.1|CF319519
genomic: GTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33680393|gb|CF308632.1|CF308632
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: CATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|87030695|gb|CI361909.1|CI361909
genomic: CATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: TATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|66920252|gb|CX107100.1|CX107100
genomic: TATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|15850824|gb|BI799100.1|BI799100
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCC-AA-TGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|88835319|gb|CI005009.1|CI005009
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: CATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|89191395|gb|CI393248.1|CI393248
genomic: CATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: CTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTEST: gi|33679207|gb|CF307446.1|CF307446
genomic: CTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
EST: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTG GTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
genomic: GTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgct ... gggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGT
gtttattccatttcatcagattccgaccctaacaattcacatcatgggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTCCGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCGAC
ccctaac putative branch site (score: 35)
ttttc putative PPT
taacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcaaactcttgtttgagcctagtcaggcatcttcccatttgtgtttattccatttcatcagattccgaccctaacaattcacatcatgggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTCCGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCGAC
- - - - - - tgtttga
- - - - - - - - - - - - - caggcat
- - - - - - - - - - - - - - - - - - - - -ttgtgtt