1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGAGGAGGATGACCATG
species | Oryza sativa |
transcript | LOC_Os01g66420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG CAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATEST: gi|7134950|gb|AU082754.1|AU082754
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG CAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATEST: gi|89187194|gb|CI047261.1|CI047261
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
EST: TCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT- --GTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATEST: gi|38478593|gb|CF962726.1|CF962726
genomic: TCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGGGCGAAAGTG CAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATEST: gi|218504195|gb|FG956553.1|FG956553
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG ---TCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATEST: gi|15854667|gb|BI807479.1|BI807479
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
EST: GTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG CAGTCAAAA-CTGAGTCTCGTTCGAAATCTAA-CTGTCAGCCCCCACAGGAEST: gi|2311211|gb|C27366.1|C27366
genomic: GTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA-AGGA
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTG CAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATEST: gi|86433437|gb|CI093780.1|CI093780
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
EST: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT- --GTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
genomic: AAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGgtaaattaat ... ctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGAT
gcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGAGGAGGATGACCATG
tttctttctgc CT-rich tract
aatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaatgagcatgcacttctgttttatcgtgacttgaatctctgctgagtacaatttctttctgcagCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCAAGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGAGGAGGATGACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG