1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gacggagggagcataggagtagcagctatagccgtgcacacgaatggcacgcaaagagtttaactgacgaaattgcatcgttgtgttgtacgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACGCGATCTACCGGAACCACAAGGGGGCCACGCCGGCGGCGGCGGCCGGGA
species | Oryza sativa |
transcript | LOC_Os01g65880.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACEST: gi|11172087|gb|AU164110.1|AU164110
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACEST: gi|86598411|gb|CI355028.1|CI355028
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: GCACCTCCTGGTTCATGTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATTCGGGAGCTTTCTGGGCTTGATCCAGCTGATCCTCTACEST: gi|11026129|gb|AU162730.1|AU162730
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACEST: gi|88481240|gb|CI418511.1|CI418511
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: CGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTTTACEST: gi|58674455|gb|CK063141.1|CK063141
genomic: CGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACEST: gi|8856858|gb|AU094176.1|AU094176
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
ggcacgcaaagagtttaactgacgaaattgcatcgttgtgttgtacgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACGCGATCTACCGGAACCACAAGGGGGCCACGCCGGCGGCGGCGGCCGGGA
aactgac putative branch site (score: 23)
agtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacggagggagcataggagtagcagctatagccgtgcacacgaatggcacgcaaagagtttaactgacgaaattgcatcgttgtgttgtacgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACGCGATCTACCGGAACCACAAGGGGGCCACGCCGGCGGCGGCGGCCGGGA
- - - - - - - - - -tagcagc
- - - - - - - - - - - - - - - -ccgtgca
- - - - - - - - - - - - - - - - - - - - - - - gcacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg