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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacggagggagcataggagtagcagctatagccgtgcacacgaatggcacgcaaagagtttaactgacgaaattgcatcgttgtgttgtacgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACGCGATCTACCGGAACCACAAGGGGGCCACGCCGGCGGCGGCGGCCGGGA

Basic information

species Oryza sativa
transcript LOC_Os01g65880.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673060|gb|CK061746.1|CK061746
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|11172087|gb|AU164110.1|AU164110
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|86598411|gb|CI355028.1|CI355028
EST:     GCACCTCCTGGTTCATGTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATTCGGGAGCTTTCTGGGCTTGATCCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|11026129|gb|AU162730.1|AU162730
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|8856858|gb|AU094176.1|AU094176
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|88481240|gb|CI418511.1|CI418511
EST:     CGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTTTAC
genomic: CGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
EST: gi|58674455|gb|CK063141.1|CK063141
EST:     GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCG                         ATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC
genomic: GCACCTCCTGGTTCATCTACGGCCTGCTCGGCCGCGACCCTTTCATCGCGgtaatttact ... cgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacgcaaagagtttaactgacgaaattgcatcgttgtgttgtacgacgtgcagATCCCCAATGGATGCGGGAGCTTTCTGGGCTTGATGCAGCTGATCCTCTACGCGATCTACCGGAACCACAAGGGGGCCACGCCGGCGGCGGCGGCCGGGA
                aactgac  putative branch site (score: 2)
           agtttaa  TA-rich tract