1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcgtagcttcggatcagaaacgcgacctctctgcttcttgattcgagcaatctgttgttctgtttttcctgacaaaatacatgcatggtgccggttttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG
species | Oryza sativa |
transcript | LOC_Os01g64660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|58590217|gb|CF988525.1|CF988525
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|33663175|gb|CF294142.1|CF294142
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|44676478|gb|CR289912.1|CR289912
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|88381754|gb|CI682426.1|CI682426
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTEST: gi|88370994|gb|CI595106.1|CI595106
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTT
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|38480766|gb|CF964855.1|CF964855
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|4714676|gb|AU055793.1|AU055793
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCNGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCCACTCGACGGCTCCNCCAACATCGACTGTNGEST: gi|88430397|gb|CI567416.1|CI567416
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAA GTATTGCGTGTGCTTTGATCC
genomic: TCCGAGGAGGACGAGGAAGCGACGTTCGTGGACCCTGCGCTGCGTGGGAAgtgcgtagct ... ttttttacagGTATTGCGTGTGCTTTGATCC
ctgttgttctgtttttcctgacaaaatacatgcatggtgccggttttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG
tcctgac putative branch site (score: 66)
ttttttttac putative PPT
ttttttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtagcttcggatcagaaacgcgacctctctgcttcttgattcgagcaatctgttgttctgtttttcctgacaaaatacatgcatggtgccggttttttttacagGTATTGCGTGTGCTTTGATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG
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