1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtcctgcatgtttctgagctcatcgatcacttgatatgtagtagtagcattgtgctgtggttcactgctcacatgattcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGC
species | Oryza sativa |
transcript | LOC_Os01g62880.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAG-GGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|86497899|gb|CI140532.1|CI140532
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|88486762|gb|CI424033.1|CI424033
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: CAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|86495195|gb|CI137828.1|CI137828
genomic: CAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|9865213|gb|AU100963.1|AU100963
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|88250236|gb|CI348466.1|CI348466
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|86862765|gb|CI331649.1|CI331649
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|88441514|gb|CI554738.1|CI554738
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: GGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|86595317|gb|CI262555.1|CI262555
genomic: GGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|88269472|gb|CI380770.1|CI380770
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|88257105|gb|CI359493.1|CI359493
genomic: AAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: GCGAAGCTCAGAGCGTTCTCCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|33689716|gb|CF317955.1|CF317955
genomic: GCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGEST: gi|87025584|gb|CI254630.1|CI254630
genomic: AAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
EST: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCT GCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
genomic: AGCAGGCGAAGCTCAGAGCGTTCTGCCACACCAGTGGCGTTCATCTCTCTgtaagtcctg ... attcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTG
ttgatatgtagtagtagcattgtgctgtggttcactgctcacatgattcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGC
tgctcac putative branch site (score: 6)
ttcttgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctgcatgtttctgagctcatcgatcacttgatatgtagtagtagcattgtgctgtggttcactgctcacatgattcttgcagGCGTATGCTCCATTGGGCAGGATGAAGGGCATCGCCGTTGATTCGGTGTTGCCATCGGTAGCCGAGATGCTAGGAAGAACTCCGGCTCAGGTTGCTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC