1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catcacaaaattgtaatactagaacgctatgtactggtagcatagggtcataatatttttaggtcgatcctaatgattcttttgtcccttttgaatttagGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGA
species | Oryza sativa |
transcript | LOC_Os01g62210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAA GAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGEST: gi|89165168|gb|CI255225.1|CI255225
genomic: GGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAgtaaaactcc ... ttgaatttagGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGG
EST: GGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAA GAACCGAGCTGGTGGGTACACCAGACTACTGCGAACTAGGATACGAGTTGGEST: gi|163921230|gb|EG710458.1|EG710458
genomic: GGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAgtaaaactcc ... ttgaatttagGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGG
EST: GGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAA GAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGG
genomic: GGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAgtaaaactcc ... ttgaatttagGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGG
ggtcataatatttttaggtcgatcctaatgattcttttgtcccttttgaatttagGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGA
tcctaat putative branch site (score: 8)
ttcttttgtccctttt putative PPT
taatatttttaggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcacaaaattgtaatactagaacgctatgtactggtagcatagggtcataatatttttaggtcgatcctaatgattcttttgtcccttttgaatttagGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- -cacaaaa
- - - - - - - - - - - - - - -tgtactg