1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atctctaccagctgtactgaacttatgttttgttggcgatgcttcttttggttgagataattctgaggtttaacctttgttcttgtctatggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
species | Oryza sativa |
transcript | LOC_Os01g62080.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|58680098|gb|CK068785.1|CK068785
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|117243444|gb|CT848361.1|CT848361
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|58694718|gb|CK083405.1|CK083405
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|58654607|gb|CK043287.1|CK043287
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|29665089|gb|CB661364.1|CB661364
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|58691283|gb|CK079970.1|CK079970
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|58593129|gb|CF991437.1|CF991437
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAGEST: gi|29679261|gb|CB675536.1|CB675536
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
EST: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGAT ATAGAATACTTAGCAAGATGGGTGAAG
genomic: CAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATgtatttttcc ... ggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
ttttggttgagataattctgaggtttaacctttgttcttgtctatggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
gtttaac putative branch site (score: 60)
agataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctctaccagctgtactgaacttatgttttgttggcgatgcttcttttggttgagataattctgaggtttaacctttgttcttgtctatggctttgcagATAGAATACTTAGCAAGATGGGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG