1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtctgtatcttgctctcttaacctttccatcttgttccgatgctttccaccaagtatctaccatgtcaatctactgttgagtgacaaaaacttatgttgggtatctgactagGTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGACATAAAGGAGATGTTCAAGGCTATGGACACTGATAACGATGGCATTGTATCTTATGAAGAAT
species | Oryza sativa |
transcript | LOC_Os01g61590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTCAAACAATTTTCTAGAATGAATAGATTCAAAAGAAGAGCACTAAGG GTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGAAATAAAGGAGATGEST: gi|2317402|gb|C22456.1|C22456
genomic: GGCTCAAACAATTTTCTAGAATGAATAGATTCAAAAGAAGAGCACTAAGGgtctgtatct ... atctgactagGTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGACATAAAGGAGATG
EST: CAATTTTCTAGAATGAATAGATTCAAAAGAAGAGCACTAAGG GTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGACATAAAGGAGATG
genomic: CAATTTTCTAGAATGAATAGATTCAAAAGAAGAGCACTAAGGgtctgtatct ... atctgactagGTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGACATAAAGGAGATG
ctaccatgtcaatctactgttgagtgacaaaaacttatgttgggtatctgactagGTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGACATAAAGGAGATGTTCAAGGCTATGGACACTGATAACGATGGCATTGTATCTTATGAAGAAT
aaaaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtatcttgctctcttaacctttccatcttgttccgatgctttccaccaagtatctaccatgtcaatctactgttgagtgacaaaaacttatgttgggtatctgactagGTCATTGCCGATCATTTATCTGCTGAGGAAGTTGAGGACATAAAGGAGATGTTCAAGGCTATGGACACTGATAACGATGGCATTGTATCTTATGAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA