1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgcccttccgtcttggtttctgaaatatcaataactgaggaaatgatgcaccttatgatggtctgatggccatgtacttaattttgttatcattttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAAGCGTAATGCATCCTGAAGCCAACAGATCTGTTGCACCGGTTGAGATGT
species | Oryza sativa |
transcript | LOC_Os01g58740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAG GGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAEST: gi|86487645|gb|CI130278.1|CI130278
genomic: AACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGgtttgccctt ... tttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTA
EST: CAAAGGAACCATTCAG GGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAEST: gi|89177422|gb|CI250871.1|CI250871
genomic: CAAAGGAACCATTCAGgtttgccctt ... tttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTA
EST: GACAGCATAAAAGGCAAAGGAACCATTCAG GGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAEST: gi|86831660|gb|CI301510.1|CI301510
genomic: GACAGCATAAAAGGCAAAGGAACCATTCAGgtttgccctt ... tttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTA
EST: AACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAG GGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAEST: gi|88902622|gb|CI088160.1|CI088160
genomic: AACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGgtttgccctt ... tttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTA
EST: AACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAG GGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTA
genomic: AACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGgtttgccctt ... tttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTA
caccttatgatggtctgatggccatgtacttaattttgttatcattttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAAGCGTAATGCATCCTGAAGCCAACAGATCTGTTGCACCGGTTGAGATGT
acttaat putative branch site (score: 4)
ttttattcc putative PPT
atgtacttaattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcccttccgtcttggtttctgaaatatcaataactgaggaaatgatgcaccttatgatggtctgatggccatgtacttaattttgttatcattttattccagGGTGTCTCTGCAGTCAATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAAGCGTAATGCATCCTGAAGCCAACAGATCTGTTGCACCGGTTGAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG