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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactgcttttcccatctagtattactgttgctttatagtattttatttcaattgctttgatctaattttgttttcttgcattttgattttcagAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA

Basic information

species Oryza sativa
transcript LOC_Os01g58690.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27546396|gb|CA764589.2|CA764589
EST:     ACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTG                         AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA
genomic: ACTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGgtaagactgc ... tgattttcagAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA
EST: gi|86420470|gb|CI056459.1|CI056459
EST:     TATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTG                         AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA
genomic: TATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGgtaagactgc ... tgattttcagAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA
EST: gi|8528070|gb|AU092885.1|AU092885
EST:     CTTTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTG                         AATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA
genomic: C-TTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGgtaagactgc ... tgattttcagAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttatttcaattgctttgatctaattttgttttcttgcattttgattttcagAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGCAACTATGTAAAA
                                ttttcttgcatttt  CT-rich tract
 atctaattttgtttt  TA-rich tract