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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaacaattcatcttaggcaagactttggtacatcaaaatctgaaagtatttaaacaggcttggacttgtaatttgtgcagGTACAGGAAATGGCATGGCTAAATCGCTGTTGCATTCTGCCAGTAAGACATACTCGGTTCCAAATGCCGTATTTGCCATTATCAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g57350.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g57350.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 4
--------------gtactaacaattc--atcttaggcaagacttt--ggtacatcaaaatctgaaagtatttaaacaggcttggacttgtaatttgtgcagGTACAGGAAATGGCATGGCTAAATCGCTGTTGCATTCTGCCAGTAAGACATACTCGGTTCCAAATGCCGTATTTGCCATTATCAGAG
              |||  | |||||   ||||   |    ||||   || |    | | |||   | | |  ||   | | | || |  |  |   |||||| ||||||||||||||||||||||| || ||| |||| |   || |  | |  ||       ||||| ||  |||| |||||  |||
ttgtctgcttatgagtaa-agcaattatgatctgtagtcctacttgcagggaagctagattctattaat-tgaaatttgacatagaatgtttctggatgcagGAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtacatcaaaatctgaaagtatttaaacaggcttggacttgtaatttgtgcagGTACAGGAAATGGCATGGCTAAATCGCTGTTGCATTCTGCCAGTAAGACATACTCGGTTCCAAATGCCGTATTTGCCATTATCAGAG
               tgaaagtatttaaa  TA-rich tract