1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actgttgttgcttttcctactctgctccaatctttcctctctctttttttttctcggtggatttaaatactaaagagaacttgatttgcgtacgttgcagGTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCTGGTGGCGTTCCTGCGGTCGGCGGTGCCGGGCTCGACCGACCCGGCGCAG
species | Oryza sativa |
transcript | LOC_Os01g56810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCGCACCGCCGGTGGCCCCATCCTTATCTACCCCATGAACAGGCACAA GTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCTEST: gi|88221267|gb|CI221223.1|CI221223
genomic: AGCCGCACCGCCGGTGGCCCCATCCTCATCTACCCCATGAACAGGCACAAgtaagcagct ... tacgttgcagGTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCT
EST: AGCCGCACCGCCGGTGGCCCCATCCTCATCTACCCCATGAACAGGCACAA GTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCT
genomic: AGCCGCACCGCCGGTGGCCCCATCCTCATCTACCCCATGAACAGGCACAAgtaagcagct ... tacgttgcagGTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCT
tttttttctcggtggatttaaatactaaagagaacttgatttgcgtacgttgcagGTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCTGGTGGCGTTCCTGCGGTCGGCGGTGCCGGGCTCGACCGACCCGGCGCAG
atttaaatactaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgttgttgcttttcctactctgctccaatctttcctctctctttttttttctcggtggatttaaatactaaagagaacttgatttgcgtacgttgcagGTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCTGGTGGCGTTCCTGCGGTCGGCGGTGCCGGGCTCGACCGACCCGGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG