1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaacattttaacttactttttttaaaccaatctttctattggcaatgtagatctataatgaagggtctataatctattgtaagtttttttttcccagcagAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGC
species | Oryza sativa |
transcript | LOC_Os01g56550.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAA AAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAEST: gi|29687102|gb|CB683377.1|CB683377
genomic: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAAgtaatctttc ... ttcccagcagAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGA
EST: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAEST: gi|29687102|gb|CB683377.1|CB683377
genomic: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCC-AAA-Agtaatctttc ... ttcccagca
EST: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAEST: gi|10931169|gb|AU161443.1|AU161443
genomic: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCC-AAA-Agtaatctttc ... ttcccagca
EST: GCATGAGCCCGTTGCCTGGNTTGGTGGGTCTGATGTCTTCTGGTCCAAAA AAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGANCGAGAEST: gi|86254112|gb|CI058839.1|CI058839
genomic: GCATGAGGCCGTTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAAgtaatctttc ... ttcccagcagAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGA
EST: TTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACAEST: gi|86254112|gb|CI058839.1|CI058839
genomic: TTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCC-AAA-Agtaatctttc ... ttcccagca
EST: TTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCCAAAACA
genomic: TTGCCTGGCTTGGTGGGTCTGATGTCTTCTGGTCC-AAA-Agtaatctttc ... ttcccagca
tgtagatctataatgaagggtctataatctattgtaagtttttttttcccagcagAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGC
tttttttttcccagc CT-rich tract
tctataatctattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacattttaacttactttttttaaaccaatctttctattggcaatgtagatctataatgaagggtctataatctattgtaagtttttttttcccagcagAAGGAGAAGAAGCCACTACCAGTAAAACCATCAGACATGAAAAGAACGAGAAGGGATCGCAGGGAACTGGAAAATATCTTATTCAAGCTTTTTGAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - -aaaccaa