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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaacccagataatcataagctgctaatagcaagagttatttcagggttctggtagggttttttgtatactctttgtgatttaattaggttttttatcagAAGAATGGAATGCCATCCGATGGCCCGCTTCCAATAAACCAGCCTGTGCATCCTCCAACATTGGGGCCCTTTAAGGTCACCTACAG

Basic information

species Oryza sativa
transcript LOC_Os01g55580.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58674773|gb|CK063460.1|CK063460
EST:     ACCACTCAGCCAAGGAAAATGGAGCTCACAGGACTAATCATGTACCTCAG                         AAGAATGGAATGCCATCCGATGGCCCGCTTCCAATAAACCAGCCTGTGCAT
genomic: ACCACTCGGCCAAGGAAAATGGAGCTCACAGGACTAATCATGTACCTCAGgtaatgacaa ... tttttatcagAAGAATGGAATGCCATCCGATGGCCCGCTTCCAATAAACCAGCCTGTGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctggtagggttttttgtatactctttgtgatttaattaggttttttatcagAAGAATGGAATGCCATCCGATGGCCCGCTTCCAATAAACCAGCCTGTGCATCCTCCAACATTGGGGCCCTTTAAGGTCACCTACAG
                                 atttaat  putative branch site (score: 4)
                                            ttttttatc  putative PPT
                               tgatttaattaggttt  TA-rich tract