1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcaatttccagcccactccttgctgaaatgcattatttatatgtattgtggaatatctgtgttctaagttttaactttaacttgcacgcagAAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGGGAA
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAG AAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCEST: gi|2280557|gb|C25052.1|C25052
genomic: GGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAGgtcaatttcc ... ttgcacgcagAAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGC
EST: GGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGATTGTTAAG AAAAGGATAGTCCGTGGTGGGAAAATCTGCCTTCTGATTTCTCCATGGAAEST: gi|66915125|gb|CX101973.1|CX101973
genomic: GGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGAT-GTTAAGgtcaatttcc ... ttgcacgcagAAAAGGATAGTC-GTGGTGG-AAAATCTGCCTTCTGATTTCTCCATGGAA
EST: GGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAG AAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCEST: gi|58675641|gb|CK064328.1|CK064328
genomic: GGGTCAGGAGGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAGgtcaatttcc ... ttgcacgcagAAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGC
EST: GGTCAGGAGTGTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAG AAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGC
genomic: GGTCAGGAG-GTTACATCCATTGCCAAATAATGAATTGAATGATGTTAAGgtcaatttcc ... ttgcacgcagAAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGC
ttatatgtattgtggaatatctgtgttctaagttttaactttaacttgcacgcagAAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGGGAA
taagttttaactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatttccagcccactccttgctgaaatgcattatttatatgtattgtggaatatctgtgttctaagttttaactttaacttgcacgcagAAAAGGATAGTCGTGGTGGAAAATCTGCCTTCTGATTTCTCCATGGAAAGCATACATGCGAAATTTGAAACAGTTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA