1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgatcttcctaatttgagttcagttttacgaactcactcgataaggttaatttagtatgaggcgaattttttgatgtcaatttcacttctttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAGGGAGTGAAAGGGCACTATCATCGGTAAACAG
species | Oryza sativa |
transcript | LOC_Os01g53600.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|218480035|gb|FG968183.1|FG968183
genomic: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GCGGAGGACCTGGACAG TTGCCTCATCTTGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|29674619|gb|CB670894.1|CB670894
genomic: GCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAEST: gi|29673186|gb|CB669461.1|CB669461
genomic: GACAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
EST: GTCAGGACAAAGATGGTGGTTATGGCGGAGGACCTGGACAG TTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
genomic: G--A---CAAAGATGGTGGTTATGGCGGAGGACCTGGACAGgttttctctt ... tttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATA
ggttaatttagtatgaggcgaattttttgatgtcaatttcacttctttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAGGGAGTGAAAGGGCACTATCATCGGTAAACAG
ttttgat putative branch site (score: 4)
tttcacttctttgt putative PPT
aattttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatcttcctaatttgagttcagttttacgaactcactcgataaggttaatttagtatgaggcgaattttttgatgtcaatttcacttctttgtgctagTTGCCTCATCTCGCTACAACTTATGCTGCTGTAAATACACTTGTAACTATAGGGAGTGAAAGGGCACTATCATCGGTAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgt