1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaaatatcctaacatcaaatacttttgactggagggagtactacttccatctcatcaaagtagctggttctcatccaagtatttgatttctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTAT
species | Oryza sativa |
transcript | LOC_Os01g53060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGATTCCTGTATCGATCATTAACTTTTG GATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTEST: gi|38477210|gb|CF961343.1|CF961343
genomic: TTTTGGATTCCTGTATCGATCATTAACTTTTGgtatagtccc ... tctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTT
EST: GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG GATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTEST: gi|88956940|gb|CI009142.1|CI009142
genomic: GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTGgtatagtccc ... tctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTT
EST: GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG GATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTEST: gi|25806625|gb|CA762586.1|CA762586
genomic: GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTGgtatagtccc ... tctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTT
EST: GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG GATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTT
genomic: GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTGgtatagtccc ... tctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTT
cttccatctcatcaaagtagctggttctcatccaagtatttgatttctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTAT
atttgat putative branch site (score: 17)
tttctctacc CT-rich tract
tatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaatatcctaacatcaaatacttttgactggagggagtactacttccatctcatcaaagtagctggttctcatccaagtatttgatttctctaccagGATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGCAAGTGAAACCTCTAGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
aaaaaat
- - - - - - - catcaaa
- - - - - - - - - - - - - -tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catccaa