1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacaaatagatcaccctttcttataagaacaaccaaagctgcaaacttgtaatactacttaaaagttcatctttgtgcttaaccaatcctgctgtatgttttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGGGAGCTATGTGGATGTGGGGAAATTGCCCGCAGCAGACTGATGCTGGAG
species | Oryza sativa |
transcript | LOC_Os01g52630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAG TTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGEST: gi|58674146|gb|CK062832.1|CK062832
genomic: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAGgtacaaatag ... tttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTG
EST: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAG TTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGEST: gi|29645077|gb|CB650084.1|CB650084
genomic: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAGgtacaaatag ... tttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTG
EST: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAG TTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGEST: gi|58689937|gb|CK078624.1|CK078624
genomic: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAGgtacaaatag ... tttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTG
EST: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAG TTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGEST: gi|58692504|gb|CK081191.1|CK081191
genomic: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAGgtacaaatag ... tttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTG
EST: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAG TTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTG
genomic: AAACGCTGCAGTCTGAAGCACAGAACAGTAGCACACAGTCTTCATTGAAGgtacaaatag ... tttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTG
ctacttaaaagttcatctttgtgcttaaccaatcctgctgtatgttttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGGGAGCTATGTGGATGTGGGGAAATTGCCCGCAGCAGACTGATGCTGGAG
gcttaac putative branch site (score: 11)
ttttgtt putative PPT
taaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaatagatcaccctttcttataagaacaaccaaagctgcaaacttgtaatactacttaaaagttcatctttgtgcttaaccaatcctgctgtatgttttgttgcagTTGTCTTCTGTTAAAGCTGGGGGCATGATGTCATTTGCCATAGACACTCTGGGAGCTATGTGGATGTGGGGAAATTGCCCGCAGCAGACTGATGCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA