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gtatgtctctgaagcaatttttatacaagaactatatattttttatctgcttaccattttcctgtactgaaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGCCCATGGAGTTCCAATTGCAGCACATTCAAAAGAAAGGCATCATCATTC
species | Oryza sativa |
transcript | LOC_Os01g51290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAGGCCATACCCCAATA GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|86487913|gb|CI130546.1|CI130546
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|89169847|gb|CI110206.1|CI110206
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|396941635|gb|HO188292.1|HO188292
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCCAGTATCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|87009778|gb|CI310881.1|CI310881
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|94362946|gb|CI053107.1|CI053107
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|88961131|gb|CI096534.1|CI096534
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCNAGCGTCAATAATCCATCCCACCAACCATGGGAAGGEST: gi|86423364|gb|CI060937.1|CI060937
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
EST: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATA GACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
genomic: TCCCATCAGATCTTATCCTCCACTTCCTGCAAATAAGCCATACCCCAATAgtatgtctct ... aaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGG
acaagaactatatattttttatctgcttaccattttcctgtactgaaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGCCCATGGAGTTCCAATTGCAGCACATTCAAAAGAAAGGCATCATCATTC
tgcttac putative branch site (score: 2)
tatatattttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctctgaagcaatttttatacaagaactatatattttttatctgcttaccattttcctgtactgaaatatgcagGACCAGCAGTGTCTCCAGCATCAATAATCCATCCCACCAACCATGGGAAGGCCCATGGAGTTCCAATTGCAGCACATTCAAAAGAAAGGCATCATCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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